Publications
Submissions from 2019
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The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants, Udall, Joshua A., Long, Evan, Ramaraj, Thiruvarangan, Conover, Justin L., Yuan, Daojun, Grover, Corrinne E., Gong, Lei, Arick, Mark A., II, Masonbrink, Rick E., Peterson, Daniel G., Wendel, Jonathan F.
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An Annotated Genome for Haliotis rufescens (Red Abalone) and Resequenced Green, Pink, Pinto, Black and White Abalone Species, Masonbrink, Rick E., Purcell, Catherine, Boles, Sara, Whitehead, Andrew, Hyde, John, Seetharam, Arun S., Severin, Andrew J.
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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes, Masonbrink, Rick E., Maier, Tom R., Muppirala, Usha, Seetharam, Arun S., Lord, Etienne, Juvale, Parijat S., Schmutz, Jeremy, Johnson, Nathan T., Korkin, Dmitry, Mitchum, Melissa G., Mimee, Benjamin, Eves-van den Akker, Sebastian, Hudson, Matthew, Severin, Andrew J., Baum, Thomas J.
Submissions from 2018
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Evidence for a unique DNA-dependent RNA polymerase in cereal crops, Trujillo, Joshua T., Seetharam, Arun S., Hufford, Matthew B., Beilstein, Mark A., Mosher, Rebecca A.
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Insights into teleost sex determination from the Seriola dorsalis genome assembly, Purcell, Catherine M., Seetharam, Arun S., Snodgrass, Owyn, Ortega-García, Sofia, Hyde, John R., Severin, Andrew J.
Submissions from 2017
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The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome, Johnson, Timothy A., Looft, Torey, Severin, Andrew J., Bayles, Darrell O., Nasko, Daniel J., Wommack, K. Eric, Howe, Adina, Allen, Heather K.
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Vascular Endothelial Growth Factor A and Leptin Expression Associated with Ectopic Proliferation and Retinal Dysplasia in Zebrafish Optic Pathway Tumors, Schultz, Laura E., Solin, Staci L., Wierson, Welsey A., Lovan, Janna M., Syrkin-Nikolau, Judith, Lincow, Deborah E., Severin, Andrew J., Sakaguchi, Donald S., McGrail, Maura
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Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development, Radhakrishnan, Srihari, Literman, Robert A., Neuwald, Jennifer L., Severin, Andrew, Valenzuela, Nicole
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Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development, Radhakrishnan, Shrihari, Literman, Robert, Neuwald, Jennifer, Severin, Andrew, Valenzuela, Nicole
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Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research, The Aquaculture Genomics, Genetics and Breeding Workshop, Severin, Andrew J., et al
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Raising orphans from a metadata morass: a researcher's guide to re-use of public ’omics data, Bhandary, Priyanka, Seetharam, Arun S., Arendsee, Zebulun, Hur, Manhoi, Wurtele, Eve Syrkin
Submissions from 2016
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Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect, Standage, Daniel S., Berens, Ali J., Glastad, Karl M., Severin, Andrew J., Brendel, Volker P., Toth, Amy L.
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A Study of Alterations in DNA Epigenetic Modifications (5mC and 5hmC) and Gene Expression Influenced by Simulated Microgravity in Human Lymphoblastoid Cells, Chowdhury, Basudev, Seetharam, Arun S., Wang, Zhiping, Liu, Yunlong, Lossie, Amy C., Thimmapuram, Jyothi, Irudayaraj, Joseph
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A motif-based method for predicting interfacial residues in both the RNA and protein components of protein-RNA complexes, Muppirala, Usha, Lewis, Benjamin A., Mann, Carla M., Dobbs, Drena L.
Submissions from 2015
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Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum, Lanubile, Alessandra, Muppirala, Usha K., Severin, Andrew J., Marocco, Adriano, Munkvold, Gary P.
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CRISPR interference and priming varies with individual spacer sequences, Xue, Chaoyou, Seetharam, Arun S., Musharova, Olga, Severinov, Konstantin, Brouns, Stan J. J., Severin, Andrew J., Sashital, Dipali G.
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Microbiome analyses of pacific white shrimp (Litopenaeus vannamei) collected from disparate geographical locations, Seetharam, Arun S., Kawaler, Emily, Du, Zhi-Qiang, Rothschild, Max F., Severin, Andrew J.
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Transcriptional analysis of phloem-associated cells of potato, Lin, Tian, Lashbrook, Coralie C., Cho, Sung Ki, Butler, Nathaniel M., Sharma, Pooja, Muppirala, Usha, Severin, Andrew J., Hannapel, David J.
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A Comparative Analysis of Methylome Profiles of Campylobacter jejuni Sheep Abortion Isolate and Gastroenteric Strains Using PacBio Data, Mou, Kathy T. Y., Muppirala, Usha, Severin, Andrew J., Clark, Tyson A., Boitano, Matthew, Plummer, Paul J.
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Transcript profiles in longissimus dorsi muscle and subcutaneous adipose tissue: A comparison of pigs with different postweaning growth rates, Pilcher, C. M., Jones, C. K., Schroyen, M., Severin, A. J., Patience, J. F., Tuggle, C. K., Koltes, J. E.
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NCBI-BLAST programs optimization on XSEDE resources for sustainable aquaculture, Seetharam, Arun S, Gomez, Antonio, Purcell, Catherine M., Hyde, John R., Blood, Philip D., Severin, Andrew J.
Submissions from 2014
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Molecular and Cellular Characterization of a Zebrafish Optic Pathway Tumor Line Implicates Glia-Derived Progenitors in Tumorigenesis, Solin, Staci L., Wang, Ying, Mauldin, Joshua, Schultz, Laura E., Lincow, Deborah E., Brodskiy, Pavel A., Jones, Crystal A., Syrkin-Nikolau, Judith, Linn, Jasmine M., Essner, Jeffrey J., Hostetter, Jesse M., Whitley, Elizabeth M., Cameron, J. Douglas, Chou, Hui-Hsien, Severin, Andrew J., Sakaguchi, Donald S., McGrail, Maura